WebThe input file for PhosPiR is “Phospho (STY)Sites.txt” from the “combined/txt” folder within MaxQuant. In case another spectra analysis tool is preferred instead of MaxQuant, such as Progenesis, Spectronaut, openMS, or PEAKS, PhosPiR has an “Other” option for input file. WebPhospho (STY) Site IDs Identifier(s) for site(s) associated with the protein group which show(s) evidence of Serine ot Threonine or Tyrosine Phosphorylation referenced against the Phospho STY Site table Unique Protein Group IDs Mod. Peptide IDs Unique identifier within this list of redundant peptide sequences
How to integrate Phospho (STY)Sites.txt into Proteus …
WebSep 26, 2024 · As described previously (Rolfs et al., 2024), raw data were processed using MaxQuant software and the Phospho(STY)sites.txt output file that contains relative quantitation for all identified phosphosites per sample (baseline and after IR exposure, with n = 3 per condition) in tabular form was used and further processed in R. The data table … WebFeb 11, 2024 · Filter the MaxQuant evidence.txt or the phospho(STY) sites.txt output file for reverse sequences and potential contaminants. To determine the selectivity of the phospho enrichment, the reported number of peptides annotated with a phosphorylation site is divided by the total number of identified sequences. The intensity based selectivity is ... diabetic industry indicted for misconduct
PhosphoSite
WebDec 8, 2024 · PhosPiR accepts output files directly from MaxQuant or preprocessed files from similar MS data processing platforms that provide peptide sequence identification and intensity data on PTMs [ 9 ]. The input file from MaxQuant for PhosPiR is the ‘Phospho (STY)Sites.txt’ file from the ‘combined/txt’ folder within MaxQuant. Webphospho-: Prefix for O- phosphono-, which may replace the suffix phosphate; for example, glucose phosphate is O- phosphonoglucose or phosphoglucose. See also: phosph- , … WebOct 8, 2024 · How to integrate Phospho (STY)Sites.txt into Proteus analysis? #40 Open subwaystation opened this issue on Oct 8, 2024 · 0 comments subwaystation on Oct 8, … diabetic indian diet chart